PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G165700.1
Common NameB456_004G165700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 177aa    MW: 19153.4 Da    PI: 7.6777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G165700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.21.7e-0791126355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+                 +lg++ t+e+Aa a+++a+ k++g
  Gorai.004G165700.1  91 YRGVRRRP-WGK-------N---------WLGTYQTPEDAALAYDKAAFKIRG 126
                         9****999.888.......5.........89********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-2190140IPR001471AP2/ERF domain
CDDcd000181.79E-2190136No hitNo description
PROSITE profilePS5103214.77690134IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1391135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-15102135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLTDQSESNS VISEDLAFLD SISQHILADD SEASFTLLDD VVSFDWQPLY GGATSSLLRN  60
PLNVGPPQPV EVKASQLEEE AAVGSGKRVN YRGVRRRPWG KNWLGTYQTP EDAALAYDKA  120
AFKIRGSKAK LNFPHLIGSS NVEPVRVGPR RRSPSLKSSS SSFSIVDSSS STMPKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1690140569ATERF1
3gcc_A3e-1690140569ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0038081e-164JN003808.1 Gossypium barbadense ethylene-responsive element-binding protein 5 (EREB5) mRNA, complete cds.
GenBankKJ9441711e-164KJ944171.1 Gossypium hirsutum cultivar Reba B50 ethylene-responsive transcription factor ER-IXa5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052301.13e-44Ethylene-responsive element binding factor 13, putative
SwissprotQ8L9K19e-34ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A0D2S0U21e-126A0A0D2S0U2_G
STRINGscaffold_403422.14e-32(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-27ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]